Bioinformatics Tools for Phylogenetic Analysis Bioinformatics tools for phylogenetic analysis enable researchers to reconstruct evolutionary relationships among organisms by analyzing DNA , RNA , or protein sequences. These tools perform essential functions such as sequence alignment, evolutionary model selection, tree building, bootstrap evaluation, and visualization. Widely used platforms-including MEGA, PhyML, RAxML, MrBayes, IQ-TREE, BEAST, and Clustal Omega-apply statistical and computational algorithms to infer phylogenetic trees with high accuracy. They support diverse methodologies like maximum likelihood, Bayesian inference, neighbor-joining, and distance-based approaches, making them indispensable in evolutionary biology, genomics , metagenomics , epidemiology, and biodiversity research. Phylogenetic analysis, Evolutionary relationships, Sequence alignment, Maximum likelihood methods, Bayesian phylogenetics, RAxML, MEGA software, IQ-TREE, Molecular evolution, Genomic da...